No, CC3 can't currently export transparent images. What you can do, is set the background to a weird solid color (e.g. color 6) and use a bitmap editor afterwards to select and removed that part. You'll need to avoid anti-aliasing and any blurring sheet effects on the border of the transparent part.
Have there been any changes in the past? I really would like to export every single sheet (with effects applied) and modify it later on but the nontransparent background keeps messing up with my ideas! And even if not, please think about implementing this feature...
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